Table of Contents

• Training Objectives

• About this Document

Computational Resources

• DesignSafe & TACC

• Computational Workflows

• ComputationalNeeds

• Compute Environments

  • JupyterHub

    • JupyterHub Environment

    • Accessing JupyterHub

    • Workflow in JupyterHub

    • JupyterHub Tools

    • OpenSees & Notebooks

    • Python within Python

  • HPC on TACC

    • HPC Resources

      • Nodes

      • Stampede3 Nodes

      • Cores

      • Queues

      • Stampede3 Queues

      • Queue Selection

      • Allocations

      • Accessing HPC

      • DesignSafe’s HPC Jupyter Lab

    • Managing Your Resources

    • SLURM Jobs

      • SLURM

      • SLURM_Workflow

      • Job Scheduling

      • Job Input

      • Job Script

      • Run a SLURM Job

      • SLURM Job Output

      • Parameter Sweeps

        • Write SLURM with Python

        • Advanced Python Function

  • Virtual Machines (VMs)

• File Storage

  • Practical Usage

  • Storage Options

    • On Corral

    • On Compute System

    • On Compute Nodes

  • Storage Guide

• Tapis

  • Tapis Jobs

  • Tapis Apps

  • DesignSafe Tapis Apps

    • OpenSees Apps

    • OpenFOAM app

    • ADCIRC app

    • Compare Apps

  • OpenSees Tapis Apps

    • App-Definition Files

    • OpenSees-EXPRESS App

      • App Structure

      • app.json

      • tapisjob_app.sh

      • Example

    • OpenSeesMP App

      • App Structure

      • app.json

      • profile.json

      • tapisjob_app.sh

  • Interface with Tapis

• OpenSees on DesignSafe

  • Workflow Decision Guide

  • OpenSees-Tcl & OpenSeesPy

  • OpenSees_Applications

  • Interpreters & Workflows

  • Decision Matrix

  • Command Structure

    • Executable File

    • Input Script File

    • Command-Line Arguments

  • Parallel Execution

    • Parallel Execution: MPI

    • Parallel Execution: ibrun

    • OpenSeesPy Parallel

  • Execution Guide

Training Modules

• OpenSees_Workflows

• OpenSees from Web Portal

  • Web-Portal Workflow

  • 1 Create Input

  • 2 Submit OpenSees-Express

  • 2 Submit OpenSeesMP

  • 3 Monitor OpenSees-Express

  • 3 Monitor OpenSeesMP

  • 4 PostProcess Ops-Express _{📂 Open in JupyterHub}

  • 4 PostProcess Ops-MP _{📂 Open in JupyterHub}

• OpenSees on JupyterHub

  • Terminal CLI

    • Run OpenSees Interactive at the CLI

    • Run OpenSees Script at the CLI

  • Python Console

  • OpenSeesPy in a Notebook _{📂 Open in JupyterHub}

  • ANY OpenSees from a Notebook _{📂 Open in JupyterHub}

  • Working with Paths

    • Storage-System Paths _{📂 Open in JupyterHub}

    • Paths in Python _{📂 Open in JupyterHub}

    • Absolute vs Relative Path _{📂 Open in JupyterHub}

    • Root & Home Paths _{📂 Open in JupyterHub}

    • Managing Paths _{📂 Open in JupyterHub}

    • Directory Contents _{📂 Open in JupyterHub}

    • Building Paths _{📂 Open in JupyterHub}

• OpenSees on HPC

  • tapis_setup

    • Tapis Authentication _{📂 Open in JupyterHub}

    • System Specifications _{📂 Open in JupyterHub}

    • Establish TMS Credentials _{📂 Open in JupyterHub}

    • Tapis Paths _{📂 Open in JupyterHub}

  • Inputs for OpenSees Apps

    • List Tapis Apps _{📂 Open in JupyterHub}

    • Get Tapis App Schema _{📂 Open in JupyterHub}

    • App Schema: opensees-express _{📂 Open in JupyterHub}

    • App Schema: opensees-mp-s3 _{📂 Open in JupyterHub}

  • Run OpenSees Tapis Apps

    • Step-by-Step OpenSees App _{📂 Open in JupyterHub}

    • Run OpenSees-Express App _{📂 Open in JupyterHub}

    • Run OpenSeesMP App _{📂 Open in JupyterHub}

  • Query and Retrieve Jobs

    • Step 1: Explore All Jobs _{📂 Open in JupyterHub}

      • Explore All Jobs _{📂 Open in JupyterHub}

      • Filter Tapis Jobs _{📂 Open in JupyterHub}

    • Step 2: Inspect Job _{📂 Open in JupyterHub}

      • Job Status _{📂 Open in JupyterHub}

      • Job Metadata _{📂 Open in JupyterHub}

      • Job History _{📂 Open in JupyterHub}

    • Step 3: Retrieve Output _{📂 Open in JupyterHub}

      • Access Output Data _{📂 Open in JupyterHub}

      • List All Job Output _{📂 Open in JupyterHub}

      • Download All Job Output _{📂 Open in JupyterHub}

    • Explore Jobs Interactively _{📂 Open in JupyterHub}

    • Cancel Tapis Job

Utilities

• OpsUtils()

  • Miscellaneous OpsUtils

    • convert_tacc_time()

    • convert_time_unix()

    • display_images_in_xbox()

    • empty_folder()

    • flatten_dict()

    • get_files_recursive()

    • get_now_unix()

    • queryDF()

    • show_text_file_in_accordion()

    • show_video()

    • unix_to_tacc_time()

  • Tapis OpsUtils

    • analyze_tacc_job_history()

    • bump_app_version()

    • cancel_tapis_job()

    • connect_tapis()

    • display_tapis_app_schema()

    • establish_tms_credentials()

    • explore_tapis_job()

    • filter_tapis_jobs_df()

    • find_work_path_path()

    • find_work_path()

    • get_latest_app_version()

    • get_system_queues()

    • get_tapis_app_schema()

    • get_tapis_job_all_files()

    • get_tapis_job_description()

    • get_tapis_job_history_data()

    • get_tapis_job_metadata()

    • get_tapis_job_status()

    • get_tapis_jobs_df()

    • get_tapis_jobs()

    • get_tapis_tenant_and_username

    • get_tapis_username()

    • get_user_path_tapis_uri()

    • get_user_work_tapis_uri()

    • interactive_tapis_job_explorer()

    • monitor_tapis_job()

    • print_nested_tapisresult()

    • revoke_tms_credentials()

    • run_tapis_job()

    • submit_tapis_job()

    • validate_app_folder()